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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0014787 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014787_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G235100.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G235100.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_193 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_164 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003729 | mRNA binding | ISM | GOs from InterProScan |
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 302 | 336 |
| IPR044179 | PPR5-like | PANTHER | 52 | 462 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 269 | 302 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 234 | 268 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 375 | 407 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 305 | 337 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 199 | 232 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 125 | 158 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 241 | 437 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 396 | 443 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 305 | 348 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 267 | 301 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 125 | 154 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 231 | 278 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 156 | 209 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 52 | 226 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 227 | 299 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 372 | 406 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 122 | 156 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 407 | 441 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 311 | 486 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 197 | 231 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 232 | 266 |
No CAZYmes available for this sequence
| No external refs found! |