Sobic.004G236000.1

Description : laccase 14

Gene families : OG_01_0000046 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000046_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G236000.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G236000.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_39
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_137

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009698	phenylpropanoid metabolic process	None	Extended
BP	GO:0009808	lignin metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016491	oxidoreductase activity	ISM	GOs from InterProScan
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	None	Extended
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0019748	secondary metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0046271	phenylpropanoid catabolic process	None	Extended
BP	GO:0046274	lignin catabolic process	ISM	GOs from InterProScan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
CC	GO:0048046	apoplast	ISM	GOs from InterProScan
MF	GO:0052716	hydroquinone:oxygen oxidoreductase activity	ISM	GOs from InterProScan
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR008972	Cupredoxin	SUPERFAMILY	44	189
IPR045087	Cu-oxidase_fam	PANTHER	23	590
IPR008972	Cupredoxin	Gene3D	396	590
IPR008972	Cupredoxin	Gene3D	174	368
IPR033138	Cu_oxidase_CS	ProSitePatterns	548	568
IPR001117	Cu-oxidase_2nd	Pfam	178	332
IPR017761	Laccase	TIGRFAM	44	590
IPR034289	CuRO_3_LCC	CDD	434	573
IPR011707	Cu-oxidase-like_N	Pfam	52	165
IPR034288	CuRO_1_LCC	CDD	48	164
IPR002355	Cu_oxidase_Cu_BS	ProSitePatterns	553	564
IPR008972	Cupredoxin	SUPERFAMILY	378	590
IPR034285	CuRO_2_LCC	CDD	179	331
IPR011706	Cu-oxidase_C	Pfam	444	573
IPR008972	Cupredoxin	Gene3D	30	164
IPR008972	Cupredoxin	SUPERFAMILY	173	590

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
AA1	358	591	8.9e-124	61	565

External Links

No external refs found!

Sobic.004G236000.1

Expression Profile

Co-expression Networks

Functional Annotation