Sobic.004G242500.1

Description : Glycosyl hydrolase family 47 protein

Gene families : OG_01_0002007 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002007_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G242500.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G242500.1	No neighbors in network
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_201

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004559	alpha-mannosidase activity	None	Extended
MF	GO:0004571	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0005975	carbohydrate metabolic process	ISM	GOs from InterProScan
BP	GO:0006517	protein deglycosylation	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009100	glycoprotein metabolic process	None	Extended
MF	GO:0015923	mannosidase activity	None	Extended
MF	GO:0015924	mannosyl-oligosaccharide mannosidase activity	None	Extended
CC	GO:0016020	membrane	ISM	GOs from InterProScan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0035977	protein deglycosylation involved in glycoprotein catabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0036507	protein demannosylation	None	Extended
BP	GO:0036508	protein alpha-1,2-demannosylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1904380	endoplasmic reticulum mannose trimming	ISM	GOs from InterProScan
BP	GO:1904382	mannose trimming involved in glycoprotein ERAD pathway	ISM	GOs from InterProScan

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036026	Seven-hairpin_glycosidases	SUPERFAMILY	40	492
IPR001382	Glyco_hydro_47	Pfam	49	483
IPR001382	Glyco_hydro_47	PRINTS	275	292
IPR001382	Glyco_hydro_47	PRINTS	389	413
IPR001382	Glyco_hydro_47	PRINTS	184	203
IPR001382	Glyco_hydro_47	PRINTS	332	348
IPR001382	Glyco_hydro_47	PRINTS	134	152
IPR001382	Glyco_hydro_47	PRINTS	49	69
IPR001382	Glyco_hydro_47	PRINTS	448	468
IPR012341	6hp_glycosidase-like_sf	Gene3D	34	493
IPR044674	EDEM1/2/3	PANTHER	33	577

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
GH47	446	580	1.2e-142	49	483

External Links

No external refs found!

Sobic.004G242500.1

Expression Profile

Co-expression Networks

Functional Annotation