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  5. Sobic.004G244400.3

Sobic.004G244400.3


Description : DEAD/DEAH box helicase, putative


Gene families : OG_01_0002184 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002184_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G244400.3
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G244400.3
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_99
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_202


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0005524 ATP binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001650 Helicase_C ProSiteProfiles 443 627
IPR014001 Helicase_ATP-bd ProSiteProfiles 171 335
IPR012961 Ski2/MTR4_C Pfam 1002 1141
IPR027417 P-loop_NTPase SUPERFAMILY 171 593
IPR011545 DEAD/DEAH_box_helicase_dom Pfam 166 318
IPR012961 Ski2/MTR4_C SMART 998 1168
IPR001650 Helicase_C SMART 476 581
IPR027417 P-loop_NTPase Gene3D 343 612
IPR027417 P-loop_NTPase Gene3D 123 342
IPR014001 Helicase_ATP-bd SMART 159 349

No CAZYmes available for this sequence

No external refs found!