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  5. Sobic.004G246800.1

Sobic.004G246800.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0012549 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012549_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G246800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G246800.1 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_2


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 521 548
IPR002885 Pentatricopeptide_rpt Pfam 125 147
IPR002885 Pentatricopeptide_rpt Pfam 319 349
IPR002885 Pentatricopeptide_rpt Pfam 289 311
IPR002885 Pentatricopeptide_rpt Pfam 495 519
IPR002885 Pentatricopeptide_rpt Pfam 215 260
IPR002885 Pentatricopeptide_rpt Pfam 418 464
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 519 553
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 216 250
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 418 452
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 317 351
IPR002885 Pentatricopeptide_rpt TIGRFAM 289 315
IPR002885 Pentatricopeptide_rpt TIGRFAM 319 352
IPR002885 Pentatricopeptide_rpt TIGRFAM 218 252
IPR002885 Pentatricopeptide_rpt TIGRFAM 521 554
IPR002885 Pentatricopeptide_rpt TIGRFAM 420 453
IPR011990 TPR-like_helical_dom_sf Gene3D 373 488
IPR011990 TPR-like_helical_dom_sf Gene3D 533 634
IPR011990 TPR-like_helical_dom_sf Gene3D 121 275
IPR011990 TPR-like_helical_dom_sf Gene3D 276 372

No CAZYmes available for this sequence

No external refs found!