Sobic.004G256500.1

Description : varicose-related

Gene families : OG_01_0004744 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004744_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G256500.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G256500.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_148
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_69

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0031087	deadenylation-independent decapping of nuclear-transcribed mRNA	ISM	GOs from InterProScan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0110154	RNA decapping	None	Extended
BP	GO:0110156	methylguanosine-cap decapping	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR032401	EDC4_WD40	Pfam	193	310
IPR032401	EDC4_WD40	Pfam	363	506
IPR045152	EDC4-like	PANTHER	1	1337
IPR044938	EDC4_C_sf	Gene3D	1249	1335
IPR001680	WD40_rpt	ProSiteProfiles	241	283
IPR001680	WD40_rpt	ProSiteProfiles	360	393
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	191	499
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	214	504
IPR001680	WD40_rpt	SMART	356	393
IPR001680	WD40_rpt	SMART	234	274
IPR001680	WD40_rpt	SMART	396	442

No CAZYmes available for this sequence

External Links

No external refs found!