1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.004G263900.1

Sobic.004G263900.1


Description : CCCH-type zinc fingerfamily protein with RNA-binding domain


Gene families : OG_01_0002026 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002026_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G263900.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G263900.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_20
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_154


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR032297 Torus Pfam 138 194
IPR000571 Znf_CCCH ProSiteProfiles 157 184
IPR000504 RRM_dom Pfam 230 286
IPR000504 RRM_dom ProSiteProfiles 228 301
IPR036855 Znf_CCCH_sf SUPERFAMILY 159 182
IPR000504 RRM_dom SMART 229 297
IPR039171 Cwc2/Slt11 PANTHER 1 475
IPR035979 RBD_domain_sf SUPERFAMILY 220 317
IPR000571 Znf_CCCH SMART 157 183
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 218 348

No CAZYmes available for this sequence

No external refs found!