Sobic.004G265500.3

Description : nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding

Gene families : OG_01_0006304 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006304_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G265500.3
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G265500.3
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_62
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_116

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	ISM	GOs from InterProScan
BP	GO:0008213	protein alkylation	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
MF	GO:0018024	obsolete histone lysine N-methyltransferase activity	ISM	GOs from InterProScan
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0034968	histone lysine methylation	ISM	GOs from InterProScan
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043687	post-translational protein modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR007728	Pre-SET_dom	SMART	1294	1420
IPR003616	Post-SET_dom	ProSiteProfiles	1576	1592
IPR013087	Znf_C2H2_type	ProSitePatterns	990	1011
IPR013087	Znf_C2H2_type	ProSitePatterns	1057	1078
IPR007728	Pre-SET_dom	ProSiteProfiles	1357	1433
IPR013087	Znf_C2H2_type	ProSitePatterns	956	977
IPR013087	Znf_C2H2_type	SMART	988	1011
IPR013087	Znf_C2H2_type	SMART	1055	1078
IPR013087	Znf_C2H2_type	SMART	920	943
IPR013087	Znf_C2H2_type	SMART	954	977
IPR013087	Znf_C2H2_type	ProSiteProfiles	1055	1083
IPR001214	SET_dom	Pfam	1447	1568
IPR007728	Pre-SET_dom	Pfam	1297	1428
IPR001214	SET_dom	SMART	1436	1575
IPR040689	SUVR5_Znf-C2H2_3rpt	Pfam	956	1079
IPR021721	Znf_CCCH-type_TRM13	Pfam	605	633
IPR013087	Znf_C2H2_type	ProSiteProfiles	954	982
IPR001214	SET_dom	ProSiteProfiles	1436	1569

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.004G265500.3

Expression Profile

Co-expression Networks

Functional Annotation