Sobic.004G265900.1

Description : carbamoyl phosphate synthetase A

Gene families : OG_01_0004658 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004658_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G265900.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G265900.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_172
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_94

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004088	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	ISM	GOs from InterProScan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006206	pyrimidine nucleobase metabolic process	None	Extended
BP	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	ISM	GOs from InterProScan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006541	glutamine metabolic process	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009064	glutamine family amino acid metabolic process	None	Extended
BP	GO:0009112	nucleobase metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	None	Extended
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046112	nucleobase biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR017926	GATASE	Pfam	265	439
IPR036480	CarbP_synth_ssu_N_sf	SUPERFAMILY	76	218
IPR029062	Class_I_gatase-like	Gene3D	224	445
IPR029062	Class_I_gatase-like	SUPERFAMILY	256	443
IPR002474	CarbamoylP_synth_ssu_N	SMART	75	205
IPR035686	CPSase_GATase1	CDD	262	438
IPR006274	CarbamoylP_synth_ssu	Hamap	75	445
IPR002474	CarbamoylP_synth_ssu_N	Pfam	79	203
IPR006274	CarbamoylP_synth_ssu	TIGRFAM	77	442
IPR036480	CarbP_synth_ssu_N_sf	Gene3D	74	223

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.004G265900.1

Expression Profile

Co-expression Networks

Functional Annotation