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  5. Sobic.004G266300.1

Sobic.004G266300.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0014188 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014188_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G266300.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G266300.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_6
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_71


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 482 670
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 502 537
IPR002885 Pentatricopeptide_rpt Pfam 168 187
IPR002885 Pentatricopeptide_rpt Pfam 340 366
IPR002885 Pentatricopeptide_rpt Pfam 368 394
IPR002885 Pentatricopeptide_rpt Pfam 442 461
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 467 501
IPR002885 Pentatricopeptide_rpt Pfam 466 514
IPR002885 Pentatricopeptide_rpt Pfam 264 312
IPR011990 TPR-like_helical_dom_sf Gene3D 194 317
IPR011990 TPR-like_helical_dom_sf Gene3D 318 419
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 265 299
IPR002885 Pentatricopeptide_rpt TIGRFAM 469 502
IPR002885 Pentatricopeptide_rpt TIGRFAM 267 300
IPR002885 Pentatricopeptide_rpt TIGRFAM 504 539

No CAZYmes available for this sequence

No external refs found!