Sobic.004G270800.3

Description : Transducin family protein / WD-40 repeat family protein

Gene families : OG_01_0000388 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000388_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G270800.3
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G270800.3
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_257
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_69

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
MF	GO:0008047	enzyme activator activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
MF	GO:0010997	anaphase-promoting complex binding	ISM	GOs from InterProScan
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
BP	GO:0031396	regulation of protein ubiquitination	None	Extended
BP	GO:0031398	positive regulation of protein ubiquitination	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031401	positive regulation of protein modification process	None	Extended
BP	GO:0043085	positive regulation of catalytic activity	None	Extended
BP	GO:0044093	positive regulation of molecular function	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051338	regulation of transferase activity	None	Extended
BP	GO:0051347	positive regulation of transferase activity	None	Extended
BP	GO:0051438	regulation of ubiquitin-protein transferase activity	None	Extended
BP	GO:0051443	positive regulation of ubiquitin-protein transferase activity	None	Extended
MF	GO:0055106	ubiquitin-protein transferase regulator activity	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097027	ubiquitin-protein transferase activator activity	ISM	GOs from InterProScan
MF	GO:0098772	molecular function regulator activity	None	Extended
MF	GO:0140677	molecular function activator activity	None	Extended
BP	GO:1901873	regulation of post-translational protein modification	None	Extended
BP	GO:1901875	positive regulation of post-translational protein modification	None	Extended
BP	GO:1903320	regulation of protein modification by small protein conjugation or removal	None	Extended
BP	GO:1903322	positive regulation of protein modification by small protein conjugation or removal	None	Extended
BP	GO:1904666	regulation of ubiquitin protein ligase activity	None	Extended
BP	GO:1904668	positive regulation of ubiquitin protein ligase activity	ISM	GOs from InterProScan

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001680	WD40_rpt	SMART	362	402
IPR001680	WD40_rpt	SMART	317	359
IPR001680	WD40_rpt	SMART	224	262
IPR001680	WD40_rpt	SMART	266	305
IPR001680	WD40_rpt	SMART	405	444
IPR001680	WD40_rpt	SMART	182	221
IPR033010	Cdc20/Fizzy	PANTHER	4	471
IPR001680	WD40_rpt	Pfam	409	444
IPR001680	WD40_rpt	Pfam	321	359
IPR001680	WD40_rpt	Pfam	270	305
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	97	447
IPR019775	WD40_repeat_CS	ProSitePatterns	431	445
IPR001680	WD40_rpt	ProSiteProfiles	189	230
IPR001680	WD40_rpt	ProSiteProfiles	273	314
IPR024977	Apc4-like_WD40_dom	Pfam	189	246
IPR011047	Quinoprotein_ADH-like_supfam	SUPERFAMILY	146	446
IPR001680	WD40_rpt	ProSiteProfiles	412	445
IPR019775	WD40_repeat_CS	ProSitePatterns	292	306

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.004G270800.3

Expression Profile

Co-expression Networks

Functional Annotation