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Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Gene families : OG_01_0011081 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011081_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G279400.2 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G279400.2 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_153 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_69 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0046872 | metal ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR000408 | Reg_chr_condens | Pfam | 316 | 364 |
| IPR000408 | Reg_chr_condens | Pfam | 485 | 533 |
| IPR000408 | Reg_chr_condens | Pfam | 537 | 585 |
| IPR000408 | Reg_chr_condens | Pfam | 588 | 636 |
| IPR000408 | Reg_chr_condens | Pfam | 367 | 419 |
| IPR000408 | Reg_chr_condens | Pfam | 423 | 471 |
| IPR001849 | PH_domain | Pfam | 18 | 126 |
| IPR009091 | RCC1/BLIP-II | SUPERFAMILY | 258 | 641 |
| IPR000306 | Znf_FYVE | SMART | 639 | 708 |
| IPR013591 | Brevis_radix_dom | ProSiteProfiles | 997 | 1052 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 537 | 588 |
| IPR000408 | Reg_chr_condens | PRINTS | 318 | 334 |
| IPR000408 | Reg_chr_condens | PRINTS | 409 | 425 |
| IPR000408 | Reg_chr_condens | PRINTS | 584 | 605 |
| IPR000408 | Reg_chr_condens | PRINTS | 425 | 439 |
| IPR000306 | Znf_FYVE | Pfam | 645 | 707 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 485 | 536 |
| IPR009091 | RCC1/BLIP-II | Gene3D | 216 | 478 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 262 | 315 |
| IPR011011 | Znf_FYVE_PHD | SUPERFAMILY | 643 | 712 |
| IPR017455 | Znf_FYVE-rel | ProSiteProfiles | 645 | 707 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 316 | 367 |
| IPR013591 | Brevis_radix_dom | Pfam | 999 | 1047 |
| IPR000408 | Reg_chr_condens | ProSitePatterns | 461 | 471 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 589 | 640 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 368 | 422 |
| IPR013083 | Znf_RING/FYVE/PHD | Gene3D | 652 | 714 |
| IPR009091 | RCC1/BLIP-II | Gene3D | 479 | 651 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 423 | 474 |
| IPR011993 | PH-like_dom_sf | Gene3D | 16 | 130 |
No CAZYmes available for this sequence
| No external refs found! |