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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0016983 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016983_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G282500.2 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G282500.2 | No neighbors in network |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_275 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 209 | 243 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 354 | 388 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 144 | 257 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 258 | 369 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 208 | 256 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 318 | 367 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 389 | 436 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 370 | 500 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 284 | 318 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 322 | 355 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 286 | 319 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 392 | 425 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 247 | 275 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 211 | 244 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 356 | 390 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 389 | 419 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 319 | 353 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 244 | 278 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 280 | 312 |
No CAZYmes available for this sequence
| No external refs found! |