Sobic.004G283000.1

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG_01_0007801 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007801_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G283000.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G283000.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_245
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_221

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	ISM	GOs from InterProScan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0030515	snoRNA binding	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
MF	GO:0034511	U3 snoRNA binding	ISM	GOs from InterProScan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	ISM	GOs from InterProScan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR019775	WD40_repeat_CS	ProSitePatterns	282	296
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	279	429
IPR000571	Znf_CCCH	ProSiteProfiles	28	54
IPR001680	WD40_rpt	SMART	339	382
IPR001680	WD40_rpt	SMART	298	335
IPR001680	WD40_rpt	SMART	258	295
IPR001680	WD40_rpt	SMART	385	422
IPR001680	WD40_rpt	SMART	214	251
IPR001680	WD40_rpt	SMART	135	174
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	132	278
IPR000571	Znf_CCCH	SMART	29	53
IPR000571	Znf_CCCH	SMART	103	130
IPR020472	G-protein_beta_WD-40_rep	PRINTS	161	175
IPR020472	G-protein_beta_WD-40_rep	PRINTS	282	296
IPR020472	G-protein_beta_WD-40_rep	PRINTS	322	336
IPR001680	WD40_rpt	Pfam	139	174
IPR001680	WD40_rpt	Pfam	300	334
IPR001680	WD40_rpt	Pfam	263	295
IPR036855	Znf_CCCH_sf	SUPERFAMILY	108	139
IPR001680	WD40_rpt	ProSiteProfiles	142	183
IPR001680	WD40_rpt	ProSiteProfiles	265	304
IPR039241	Rrp9-like	PANTHER	9	425
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	137	426
IPR000571	Znf_CCCH	ProSiteProfiles	103	131
IPR000571	Znf_CCCH	Pfam	107	129

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.004G283000.1

Expression Profile

Co-expression Networks

Functional Annotation