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  5. Sobic.004G294500.1

Sobic.004G294500.1


Description : expansin B4


Gene families : OG_01_0006010 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006010_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G294500.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G294500.1 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_219


Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM GOs from InterProScan
BP GO:0019953 sexual reproduction ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR009009 RlpA-like_DPBB Pfam 73 154
IPR007117 Expansin_CBD Pfam 166 247
IPR036908 RlpA-like_sf Gene3D 25 160
IPR007112 Expansin/allergen_DPBB_dom ProSiteProfiles 54 164
IPR036749 Expansin_CBD_sf SUPERFAMILY 166 258
IPR036749 Expansin_CBD_sf Gene3D 161 263
IPR005795 LolPI PRINTS 136 151
IPR005795 LolPI PRINTS 168 183
IPR005795 LolPI PRINTS 184 199
IPR005795 LolPI PRINTS 234 251
IPR005795 LolPI PRINTS 114 129
IPR005795 LolPI PRINTS 214 231
IPR005795 LolPI PRINTS 74 85
IPR007112 Expansin/allergen_DPBB_dom SMART 72 154
IPR007118 Expan_Lol_pI PRINTS 147 163
IPR007118 Expan_Lol_pI PRINTS 53 71
IPR007118 Expan_Lol_pI PRINTS 76 94
IPR007118 Expan_Lol_pI PRINTS 244 258
IPR007118 Expan_Lol_pI PRINTS 205 219
IPR007118 Expan_Lol_pI PRINTS 35 50
IPR007117 Expansin_CBD ProSiteProfiles 177 258
IPR036908 RlpA-like_sf SUPERFAMILY 33 163

No CAZYmes available for this sequence

No external refs found!