1. Home
  2. Species
  3. Setaria viridis
  4. Sequence
  5. Sevir.8G214600.1

Sevir.8G214600.1


Description : U2 snRNP auxilliary factor, large subunit, splicing factor


Gene families : OG_01_0000156 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000156_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.8G214600.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.8G214600.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_140
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_96


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
BP GO:0006397 mRNA processing ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom ProSiteProfiles 258 341
IPR000504 RRM_dom Pfam 380 449
IPR000504 RRM_dom SMART 379 452
IPR000504 RRM_dom SMART 499 580
IPR000504 RRM_dom SMART 259 337
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 487 592
IPR000504 RRM_dom ProSiteProfiles 378 456
IPR006529 U2AF_lg TIGRFAM 75 591
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 369 477
IPR035979 RBD_domain_sf SUPERFAMILY 379 583
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 253 354
IPR035979 RBD_domain_sf SUPERFAMILY 235 343

No CAZYmes available for this sequence

No external refs found!