Sobic.004G321600.1

Description : pectin methylesterase 61

Gene families : OG_01_0001022 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001022_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G321600.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G321600.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_24
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_318

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004857	enzyme inhibitor activity	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030599	pectinesterase activity	ISM	GOs from InterProScan
BP	GO:0042545	cell wall modification	ISM	GOs from InterProScan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
MF	GO:0140678	molecular function inhibitor activity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR006501	Pectinesterase_inhib_dom	SMART	52	201
IPR033131	Pectinesterase_Asp_AS	ProSitePatterns	412	421
IPR012334	Pectin_lyas_fold	Gene3D	249	575
IPR006501	Pectinesterase_inhib_dom	TIGRFAM	47	173
IPR035513	Invertase/methylesterase_inhib	SUPERFAMILY	60	201
IPR000070	Pectinesterase_cat	Pfam	255	561
IPR011050	Pectin_lyase_fold/virulence	SUPERFAMILY	252	574
IPR006501	Pectinesterase_inhib_dom	Pfam	58	201
IPR035513	Invertase/methylesterase_inhib	Gene3D	52	203

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
CE8	288	576	7.4e-99	256	559

External Links

No external refs found!