Sobic.004G325400.1

Description : cyclic nucleotide-gated channel 17

Gene families : OG_01_0007728 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007728_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G325400.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G325400.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_296
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_152

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	monoatomic ion channel activity	ISM	GOs from InterProScan
MF	GO:0005244	voltage-gated monoatomic ion channel activity	None	Extended
MF	GO:0005249	voltage-gated potassium channel activity	ISM	GOs from InterProScan
MF	GO:0005261	monoatomic cation channel activity	None	Extended
MF	GO:0005267	potassium channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	ISM	GOs from InterProScan
BP	GO:0006812	monoatomic cation transport	None	Extended
BP	GO:0006813	potassium ion transport	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008324	monoatomic cation transmembrane transporter activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015079	potassium ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	ISM	GOs from InterProScan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022832	voltage-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022843	voltage-gated monoatomic cation channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0022890	inorganic cation transmembrane transporter activity	None	Extended
BP	GO:0030001	metal ion transport	None	Extended
MF	GO:0046873	metal ion transmembrane transporter activity	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	ISM	GOs from InterProScan
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901702	salt transmembrane transporter activity	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003938	K_chnl_volt-dep_EAG/ELK/ERG	PRINTS	349	366
IPR003938	K_chnl_volt-dep_EAG/ELK/ERG	PRINTS	262	272
IPR003938	K_chnl_volt-dep_EAG/ELK/ERG	PRINTS	143	152
IPR003938	K_chnl_volt-dep_EAG/ELK/ERG	PRINTS	443	450
IPR003938	K_chnl_volt-dep_EAG/ELK/ERG	PRINTS	375	386
IPR003938	K_chnl_volt-dep_EAG/ELK/ERG	PRINTS	393	402
IPR018490	cNMP-bd_dom_sf	SUPERFAMILY	409	602
IPR000595	cNMP-bd_dom	CDD	480	611
IPR000595	cNMP-bd_dom	ProSiteProfiles	480	564
IPR000595	cNMP-bd_dom	Pfam	503	591
IPR014710	RmlC-like_jellyroll	Gene3D	478	598
IPR005821	Ion_trans_dom	Pfam	84	408
IPR000595	cNMP-bd_dom	SMART	480	611

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.004G325400.1

Expression Profile

Co-expression Networks

Functional Annotation