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  5. Sobic.004G340400.1

Sobic.004G340400.1


Description : Trimeric LpxA-like enzyme


Gene families : OG_01_0004527 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004527_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G340400.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G340400.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_137
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_228


Type GO Term Name Evidence Source
MF GO:0005085 guanyl-nucleotide exchange factor activity ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0009058 biosynthetic process ISM GOs from InterProScan
MF GO:0016779 nucleotidyltransferase activity ISM GOs from InterProScan
MF GO:0031369 translation initiation factor binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR003307 W2_domain ProSiteProfiles 564 735
IPR029044 Nucleotide-diphossugar_trans SUPERFAMILY 31 408
IPR016024 ARM-type_fold SUPERFAMILY 570 729
IPR003307 W2_domain Pfam 656 735
IPR003307 W2_domain SMART 644 731
IPR005835 NTP_transferase_dom Pfam 34 178
IPR029044 Nucleotide-diphossugar_trans Gene3D 22 314
IPR001451 Hexapep Pfam 358 383
IPR044123 W2_eIF2B_epsilon CDD 568 726
IPR035543 eIF-2B_epsilon_N CDD 31 250

No CAZYmes available for this sequence

No external refs found!