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  5. Sobic.004G351800.1

Sobic.004G351800.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0009565 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009565_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.004G351800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.004G351800.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_157
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_187


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 533 564
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 647 681
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 607 646
IPR011990 TPR-like_helical_dom_sf Gene3D 6 94
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 187 221
IPR002885 Pentatricopeptide_rpt TIGRFAM 540 573
IPR002885 Pentatricopeptide_rpt TIGRFAM 224 258
IPR002885 Pentatricopeptide_rpt TIGRFAM 119 152
IPR002885 Pentatricopeptide_rpt TIGRFAM 469 502
IPR002885 Pentatricopeptide_rpt TIGRFAM 333 362
IPR002885 Pentatricopeptide_rpt TIGRFAM 399 432
IPR002885 Pentatricopeptide_rpt TIGRFAM 84 118
IPR002885 Pentatricopeptide_rpt TIGRFAM 435 467
IPR002885 Pentatricopeptide_rpt TIGRFAM 16 47
IPR002885 Pentatricopeptide_rpt TIGRFAM 51 83
IPR002885 Pentatricopeptide_rpt TIGRFAM 189 222
IPR002885 Pentatricopeptide_rpt TIGRFAM 366 398
IPR002885 Pentatricopeptide_rpt TIGRFAM 154 187
IPR002885 Pentatricopeptide_rpt TIGRFAM 574 608
IPR002885 Pentatricopeptide_rpt TIGRFAM 259 293
IPR002885 Pentatricopeptide_rpt TIGRFAM 650 679
IPR011990 TPR-like_helical_dom_sf Gene3D 285 356
IPR011990 TPR-like_helical_dom_sf Gene3D 427 497
IPR011990 TPR-like_helical_dom_sf Gene3D 215 284
IPR011990 TPR-like_helical_dom_sf Gene3D 357 426
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 117 151
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 397 431
IPR002885 Pentatricopeptide_rpt Pfam 622 644
IPR002885 Pentatricopeptide_rpt Pfam 51 79
IPR002885 Pentatricopeptide_rpt Pfam 333 359
IPR002885 Pentatricopeptide_rpt Pfam 154 184
IPR002885 Pentatricopeptide_rpt Pfam 16 44
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 257 291
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 362 396
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 292 326
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 467 501
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 152 186
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 537 571
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 82 116
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 327 361
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 572 606
IPR002885 Pentatricopeptide_rpt Pfam 571 618
IPR002885 Pentatricopeptide_rpt Pfam 81 130
IPR002885 Pentatricopeptide_rpt Pfam 431 478
IPR002885 Pentatricopeptide_rpt Pfam 256 305
IPR002885 Pentatricopeptide_rpt Pfam 362 410
IPR002885 Pentatricopeptide_rpt Pfam 646 692
IPR002885 Pentatricopeptide_rpt Pfam 187 235
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 12 46
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 47 81
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 432 466
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 222 256
IPR011990 TPR-like_helical_dom_sf Gene3D 626 746
IPR011990 TPR-like_helical_dom_sf Gene3D 507 625
IPR011990 TPR-like_helical_dom_sf Gene3D 95 214
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 682 716

No CAZYmes available for this sequence

No external refs found!