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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0005323 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005323_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G008400.2 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G008400.2 | No neighbors in network |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_158 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 109 | 143 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 182 | 209 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 82 | 109 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 1 | 57 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 86 | 367 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 106 | 153 |
| IPR032867 | DYW_dom | Pfam | 383 | 505 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 107 | 141 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 345 | 379 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 177 | 211 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 6 | 40 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 182 | 209 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 282 | 307 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 8 | 28 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 349 | 377 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 211 | 239 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 274 | 431 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 173 | 273 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 58 | 172 |
No CAZYmes available for this sequence
| No external refs found! |