1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.005G009600.2

Sobic.005G009600.2


Description : pectin methylesterase 38


Gene families : OG_01_0082985 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0082985_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G009600.2
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G009600.2
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_24
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_101


Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity ISM GOs from InterProScan
BP GO:0042545 cell wall modification ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR033131 Pectinesterase_Asp_AS ProSitePatterns 187 196
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 39 348
IPR000070 Pectinesterase_cat Pfam 45 340
IPR012334 Pectin_lyas_fold Gene3D 37 352
HMM Family HMM Length Query Length e-Value Query Start Query End
CE8 288 374 4.2e-88 45 339
No external refs found!