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  5. Sobic.005G024600.1

Sobic.005G024600.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000072 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000072_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G024600.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G024600.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_133
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_129


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 124 159
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 233 267
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 554 588
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 589 623
IPR002885 Pentatricopeptide_rpt Pfam 129 148
IPR002885 Pentatricopeptide_rpt Pfam 92 116
IPR002885 Pentatricopeptide_rpt Pfam 341 366
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 449 483
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 379 413
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 198 232
IPR011990 TPR-like_helical_dom_sf Gene3D 512 580
IPR011990 TPR-like_helical_dom_sf Gene3D 225 295
IPR011990 TPR-like_helical_dom_sf Gene3D 296 366
IPR011990 TPR-like_helical_dom_sf Gene3D 440 511
IPR011990 TPR-like_helical_dom_sf Gene3D 367 439
IPR011990 TPR-like_helical_dom_sf Gene3D 150 224
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 338 372
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 484 518
IPR002885 Pentatricopeptide_rpt TIGRFAM 591 624
IPR002885 Pentatricopeptide_rpt TIGRFAM 200 234
IPR002885 Pentatricopeptide_rpt TIGRFAM 341 369
IPR002885 Pentatricopeptide_rpt TIGRFAM 127 161
IPR002885 Pentatricopeptide_rpt TIGRFAM 451 485
IPR002885 Pentatricopeptide_rpt TIGRFAM 556 589
IPR002885 Pentatricopeptide_rpt TIGRFAM 696 730
IPR002885 Pentatricopeptide_rpt TIGRFAM 416 449
IPR002885 Pentatricopeptide_rpt TIGRFAM 626 660
IPR002885 Pentatricopeptide_rpt TIGRFAM 381 415
IPR002885 Pentatricopeptide_rpt TIGRFAM 162 191
IPR002885 Pentatricopeptide_rpt TIGRFAM 661 695
IPR002885 Pentatricopeptide_rpt TIGRFAM 488 520
IPR002885 Pentatricopeptide_rpt TIGRFAM 305 339
IPR002885 Pentatricopeptide_rpt TIGRFAM 235 269
IPR002885 Pentatricopeptide_rpt TIGRFAM 521 554
IPR002885 Pentatricopeptide_rpt TIGRFAM 91 124
IPR002885 Pentatricopeptide_rpt TIGRFAM 270 304
IPR011990 TPR-like_helical_dom_sf Gene3D 6 149
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 268 302
IPR011990 TPR-like_helical_dom_sf Gene3D 581 792
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 414 448
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 519 553
IPR002885 Pentatricopeptide_rpt Pfam 688 738
IPR002885 Pentatricopeptide_rpt Pfam 378 427
IPR002885 Pentatricopeptide_rpt Pfam 267 316
IPR002885 Pentatricopeptide_rpt Pfam 197 246
IPR002885 Pentatricopeptide_rpt Pfam 483 531
IPR002885 Pentatricopeptide_rpt Pfam 624 671
IPR002885 Pentatricopeptide_rpt Pfam 553 601
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 89 123
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 659 693
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 624 658
IPR002885 Pentatricopeptide_rpt Pfam 156 187
IPR002885 Pentatricopeptide_rpt Pfam 444 476
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 694 728
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 303 337
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 160 194

No CAZYmes available for this sequence

No external refs found!