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  5. Sevir.8G221000.1

Sevir.8G221000.1


Description : laccase 7


Gene families : OG_01_0007444 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007444_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.8G221000.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_265


Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding ISM GOs from InterProScan
MF GO:0016491 oxidoreductase activity ISM GOs from InterProScan
BP GO:0046274 lignin catabolic process ISM GOs from InterProScan
CC GO:0048046 apoplast ISM GOs from InterProScan
MF GO:0052716 hydroquinone:oxygen oxidoreductase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR034285 CuRO_2_LCC CDD 167 316
IPR008972 Cupredoxin Gene3D 393 612
IPR008972 Cupredoxin SUPERFAMILY 160 365
IPR008972 Cupredoxin Gene3D 16 151
IPR008972 Cupredoxin SUPERFAMILY 405 602
IPR033138 Cu_oxidase_CS ProSitePatterns 560 580
IPR045087 Cu-oxidase_fam PANTHER 17 604
IPR002355 Cu_oxidase_Cu_BS ProSitePatterns 565 576
IPR008972 Cupredoxin Gene3D 164 336
IPR011706 Cu-oxidase_C Pfam 446 584
IPR034288 CuRO_1_LCC CDD 35 151
IPR011707 Cu-oxidase-like_N Pfam 41 152
IPR017761 Laccase TIGRFAM 32 602
IPR034289 CuRO_3_LCC CDD 443 585
IPR001117 Cu-oxidase_2nd Pfam 167 316
IPR008972 Cupredoxin SUPERFAMILY 30 177
HMM Family HMM Length Query Length e-Value Query Start Query End
AA1 358 629 1.5e-117 52 577
No external refs found!