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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0010390 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010390_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G026400.4 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G026400.4 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_137 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_134 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 134 | 168 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 291 | 400 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 467 | 594 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 188 | 290 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 274 | 308 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 239 | 273 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 99 | 133 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 309 | 343 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 52 | 109 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 64 | 98 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 133 | 181 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 238 | 286 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 499 | 546 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 309 | 357 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 378 | 426 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 169 | 203 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 29 | 63 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 204 | 238 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 381 | 415 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 32 | 64 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 102 | 135 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 172 | 205 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 502 | 534 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 311 | 345 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 206 | 239 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 277 | 308 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 346 | 380 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 242 | 274 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 136 | 169 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 66 | 100 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 199 | 231 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 1 | 73 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 74 | 187 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 499 | 533 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 344 | 378 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 379 | 413 |
No CAZYmes available for this sequence
| No external refs found! |