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  5. Sobic.005G026500.2

Sobic.005G026500.2


Description : rna processing factor 2


Gene families : OG_01_0000072 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000072_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G026500.2
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G026500.2 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_48


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 447 481
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 587 621
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 622 656
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 202 236
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 482 516
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 237 271
IPR002885 Pentatricopeptide_rpt Pfam 548 579
IPR002885 Pentatricopeptide_rpt Pfam 160 191
IPR002885 Pentatricopeptide_rpt Pfam 90 112
IPR002885 Pentatricopeptide_rpt Pfam 275 320
IPR002885 Pentatricopeptide_rpt Pfam 622 668
IPR002885 Pentatricopeptide_rpt Pfam 376 425
IPR002885 Pentatricopeptide_rpt Pfam 201 250
IPR002885 Pentatricopeptide_rpt Pfam 481 529
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 272 306
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 657 691
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 164 198
IPR011990 TPR-like_helical_dom_sf Gene3D 301 369
IPR011990 TPR-like_helical_dom_sf Gene3D 511 582
IPR011990 TPR-like_helical_dom_sf Gene3D 370 437
IPR011990 TPR-like_helical_dom_sf Gene3D 438 510
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 517 551
IPR011990 TPR-like_helical_dom_sf Gene3D 601 797
IPR011990 TPR-like_helical_dom_sf Gene3D 13 194
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 307 341
IPR002885 Pentatricopeptide_rpt Pfam 450 479
IPR002885 Pentatricopeptide_rpt Pfam 345 374
IPR002885 Pentatricopeptide_rpt Pfam 589 618
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 692 726
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 93 127
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 412 446
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 128 163
IPR011990 TPR-like_helical_dom_sf Gene3D 195 300
IPR002885 Pentatricopeptide_rpt TIGRFAM 660 693
IPR002885 Pentatricopeptide_rpt TIGRFAM 309 343
IPR002885 Pentatricopeptide_rpt TIGRFAM 519 553
IPR002885 Pentatricopeptide_rpt TIGRFAM 589 621
IPR002885 Pentatricopeptide_rpt TIGRFAM 625 655
IPR002885 Pentatricopeptide_rpt TIGRFAM 131 165
IPR002885 Pentatricopeptide_rpt TIGRFAM 380 413
IPR002885 Pentatricopeptide_rpt TIGRFAM 555 587
IPR002885 Pentatricopeptide_rpt TIGRFAM 95 128
IPR002885 Pentatricopeptide_rpt TIGRFAM 345 377
IPR002885 Pentatricopeptide_rpt TIGRFAM 416 448
IPR002885 Pentatricopeptide_rpt TIGRFAM 204 238
IPR002885 Pentatricopeptide_rpt TIGRFAM 450 483
IPR002885 Pentatricopeptide_rpt TIGRFAM 275 308
IPR002885 Pentatricopeptide_rpt TIGRFAM 166 192
IPR002885 Pentatricopeptide_rpt TIGRFAM 239 272
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 342 376
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 377 411
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 552 586

No CAZYmes available for this sequence

No external refs found!