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  5. Sobic.005G027400.2

Sobic.005G027400.2


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0007839 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007839_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G027400.2
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G027400.2
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_326
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_152


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom ProSiteProfiles 294 371
IPR035979 RBD_domain_sf SUPERFAMILY 290 374
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 20 200
IPR000504 RRM_dom SMART 124 194
IPR000504 RRM_dom SMART 295 367
IPR000504 RRM_dom SMART 201 277
IPR000504 RRM_dom Pfam 202 267
IPR000504 RRM_dom Pfam 125 192
IPR000504 RRM_dom Pfam 296 363
IPR000504 RRM_dom ProSiteProfiles 200 281
IPR000504 RRM_dom ProSiteProfiles 123 198
IPR035979 RBD_domain_sf SUPERFAMILY 121 285
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 201 280
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 282 387
IPR003954 RRM_dom_euk SMART 124 194
IPR003954 RRM_dom_euk SMART 295 367

No CAZYmes available for this sequence

No external refs found!