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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0000170 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000170_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G027600.2 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G027600.2 | No neighbors in network |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_105 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 446 | 607 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 190 | 223 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 329 | 362 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 119 | 151 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 364 | 397 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 49 | 82 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 155 | 187 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 14 | 48 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 84 | 118 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 469 | 503 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 399 | 432 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 296 | 328 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 226 | 258 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 434 | 467 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 259 | 293 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 117 | 151 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 362 | 396 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 12 | 46 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 82 | 116 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 187 | 221 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 502 | 536 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 432 | 466 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 152 | 186 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 198 | 312 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 96 | 197 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 1 | 95 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 364 | 445 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 397 | 431 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 327 | 361 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 222 | 256 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 85 | 130 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 186 | 235 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 11 | 60 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 467 | 508 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 396 | 445 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 326 | 375 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 288 | 320 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 253 | 284 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 292 | 326 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 47 | 81 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 257 | 291 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 154 | 184 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 467 | 501 |
No CAZYmes available for this sequence
| No external refs found! |