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  5. Sobic.005G059400.2

Sobic.005G059400.2


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_01_0005657 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005657_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G059400.2
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G059400.2 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_185


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 151 180
IPR002885 Pentatricopeptide_rpt Pfam 188 215
IPR011990 TPR-like_helical_dom_sf Gene3D 210 281
IPR011990 TPR-like_helical_dom_sf Gene3D 282 348
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 219 253
IPR002885 Pentatricopeptide_rpt Pfam 78 127
IPR002885 Pentatricopeptide_rpt Pfam 289 333
IPR002885 Pentatricopeptide_rpt Pfam 220 267
IPR002885 Pentatricopeptide_rpt Pfam 8 49
IPR011990 TPR-like_helical_dom_sf Gene3D 103 209
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 289 319
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 151 314
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 254 288
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 44 78
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 149 183
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 9 43
IPR011990 TPR-like_helical_dom_sf Gene3D 1 97
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 184 218
IPR002885 Pentatricopeptide_rpt TIGRFAM 82 112
IPR002885 Pentatricopeptide_rpt TIGRFAM 188 219
IPR002885 Pentatricopeptide_rpt TIGRFAM 256 276
IPR002885 Pentatricopeptide_rpt TIGRFAM 322 344
IPR002885 Pentatricopeptide_rpt TIGRFAM 291 318
IPR002885 Pentatricopeptide_rpt TIGRFAM 11 45
IPR002885 Pentatricopeptide_rpt TIGRFAM 222 254
IPR002885 Pentatricopeptide_rpt TIGRFAM 116 149
IPR002885 Pentatricopeptide_rpt TIGRFAM 47 78
IPR002885 Pentatricopeptide_rpt TIGRFAM 151 181
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 79 113
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 114 148
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 320 354

No CAZYmes available for this sequence

No external refs found!