Sobic.005G066900.1

Description : DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases

Gene families : OG_01_0002808 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002808_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G066900.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G066900.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_338
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_80

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003887	DNA-directed DNA polymerase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0034061	DNA polymerase activity	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR006134	DNA-dir_DNA_pol_B_multi_dom	Pfam	539	972
IPR025687	Znf-C4pol	Pfam	1009	1080
IPR012337	RNaseH-like_sf	SUPERFAMILY	121	545
IPR006172	DNA-dir_DNA_pol_B	SMART	306	765
IPR036397	RNaseH_sf	Gene3D	307	525
IPR006172	DNA-dir_DNA_pol_B	PRINTS	751	759
IPR006172	DNA-dir_DNA_pol_B	PRINTS	598	611
IPR006172	DNA-dir_DNA_pol_B	PRINTS	690	702
IPR043502	DNA/RNA_pol_sf	SUPERFAMILY	564	974
IPR017964	DNA-dir_DNA_pol_B_CS	ProSitePatterns	753	761
IPR023211	DNA_pol_palm_dom_sf	Gene3D	580	810
IPR042087	DNA_pol_B_thumb	Gene3D	827	982
IPR006133	DNA-dir_DNA_pol_B_exonuc	Pfam	132	475

No CAZYmes available for this sequence

External Links

No external refs found!