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  5. Sobic.005G084900.4

Sobic.005G084900.4


Description : Trypsin family protein with PDZ domain


Gene families : OG_01_0005742 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005742_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G084900.4
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G084900.4
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_255
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_37


Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006508 proteolysis ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR041489 PDZ_6 Pfam 360 409
IPR001940 Peptidase_S1C PRINTS 221 245
IPR001940 Peptidase_S1C PRINTS 259 276
IPR001940 Peptidase_S1C PRINTS 151 163
IPR001940 Peptidase_S1C PRINTS 281 298
IPR001940 Peptidase_S1C PRINTS 370 382
IPR001478 PDZ SMART 324 411
IPR036034 PDZ_sf Gene3D 321 423
IPR001478 PDZ ProSiteProfiles 308 388
IPR009003 Peptidase_S1_PA SUPERFAMILY 110 321
IPR036034 PDZ_sf SUPERFAMILY 323 421

No CAZYmes available for this sequence

No external refs found!