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  5. Sobic.005G106432.1

Sobic.005G106432.1


Description : zinc knuckle (CCHC-type) family protein


Gene families : OG_01_0000251 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000251_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G106432.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G106432.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_31
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_44


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001878 Znf_CCHC ProSiteProfiles 585 599
IPR001878 Znf_CCHC SMART 537 553
IPR001878 Znf_CCHC SMART 447 463
IPR001878 Znf_CCHC SMART 414 430
IPR001878 Znf_CCHC SMART 584 600
IPR001878 Znf_CCHC Pfam 584 599
IPR001878 Znf_CCHC Pfam 536 552
IPR036875 Znf_CCHC_sf SUPERFAMILY 523 560
IPR001878 Znf_CCHC ProSiteProfiles 537 552
IPR001878 Znf_CCHC ProSiteProfiles 415 430
IPR036875 Znf_CCHC_sf SUPERFAMILY 407 465
IPR036875 Znf_CCHC_sf SUPERFAMILY 566 601

No CAZYmes available for this sequence

No external refs found!