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  5. Sobic.005G109201.1

Sobic.005G109201.1


Description : zinc knuckle (CCHC-type) family protein


Gene families : OG_01_0192882 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): No tree available for this family

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G109201.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G109201.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_56
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_6


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001878 Znf_CCHC ProSiteProfiles 428 443
IPR036875 Znf_CCHC_sf SUPERFAMILY 322 379
IPR036875 Znf_CCHC_sf SUPERFAMILY 457 492
IPR036875 Znf_CCHC_sf SUPERFAMILY 415 451
IPR001878 Znf_CCHC ProSiteProfiles 476 490
IPR001878 Znf_CCHC SMART 328 344
IPR001878 Znf_CCHC SMART 361 377
IPR001878 Znf_CCHC SMART 475 491
IPR001878 Znf_CCHC SMART 428 444
IPR001878 Znf_CCHC Pfam 475 490
IPR001878 Znf_CCHC Pfam 427 443
IPR001878 Znf_CCHC ProSiteProfiles 329 344

No CAZYmes available for this sequence

No external refs found!