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  5. Sobic.005G110436.1

Sobic.005G110436.1


Description : Glycosyl hydrolase family protein


Gene families : OG_01_0000165 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000165_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G110436.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G110436.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_16
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_20


Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
MF GO:0009044 xylan 1,4-beta-xylosidase activity ISM GOs from InterProScan
BP GO:0045493 xylan catabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036962 Glyco_hydro_3_N_sf Gene3D 58 378
IPR036881 Glyco_hydro_3_C_sf SUPERFAMILY 406 638
IPR026891 Fn3-like SMART 701 771
IPR044993 BXL PANTHER 11 778
IPR002772 Glyco_hydro_3_C Pfam 406 635
IPR013783 Ig-like_fold Gene3D 678 777
IPR001764 Glyco_hydro_3_N Pfam 114 361
IPR036881 Glyco_hydro_3_C_sf Gene3D 392 636
IPR026891 Fn3-like Pfam 702 769
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 46 404
HMM Family HMM Length Query Length e-Value Query Start Query End
GH3 216 779 1.8e-67 80 332
No external refs found!