1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.005G110478.1

Sobic.005G110478.1


Description : zinc knuckle (CCHC-type) family protein


Gene families : OG_01_0024768 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0024768_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G110478.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G110478.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_289
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_133


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036875 Znf_CCHC_sf SUPERFAMILY 497 533
IPR001878 Znf_CCHC SMART 388 404
IPR001878 Znf_CCHC SMART 510 526
IPR001878 Znf_CCHC SMART 557 573
IPR001878 Znf_CCHC SMART 421 437
IPR001878 Znf_CCHC Pfam 509 525
IPR001878 Znf_CCHC Pfam 557 572
IPR001878 Znf_CCHC ProSiteProfiles 558 572
IPR001878 Znf_CCHC ProSiteProfiles 510 525
IPR036875 Znf_CCHC_sf SUPERFAMILY 539 574
IPR036875 Znf_CCHC_sf SUPERFAMILY 381 439
IPR001878 Znf_CCHC ProSiteProfiles 389 404

No CAZYmes available for this sequence

No external refs found!