1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.005G110550.1

Sobic.005G110550.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0014788 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014788_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G110550.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G110550.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_125
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_71


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 85 237
IPR011990 TPR-like_helical_dom_sf Gene3D 238 341
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 291 325
IPR002885 Pentatricopeptide_rpt Pfam 294 337
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 156 186
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 187 221
IPR002885 Pentatricopeptide_rpt Pfam 366 389
IPR002885 Pentatricopeptide_rpt Pfam 432 457
IPR002885 Pentatricopeptide_rpt Pfam 190 219
IPR002885 Pentatricopeptide_rpt Pfam 161 187
IPR002885 Pentatricopeptide_rpt Pfam 264 289
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 167 449
IPR002885 Pentatricopeptide_rpt TIGRFAM 295 327
IPR002885 Pentatricopeptide_rpt TIGRFAM 190 221
IPR011990 TPR-like_helical_dom_sf Gene3D 342 473

No CAZYmes available for this sequence

No external refs found!