Sobic.005G119900.1

Description : FAD-binding Berberine family protein

Gene families : OG_01_0048984 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0048984_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G119900.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G119900.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_28
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_20

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0016491	oxidoreductase activity	ISM	GOs from InterProScan
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0050660	flavin adenine dinucleotide binding	ISM	GOs from InterProScan
MF	GO:0071949	FAD binding	ISM	GOs from InterProScan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR012951	BBE	Pfam	464	524
IPR016167	FAD-bd_PCMH_sub1	Gene3D	24	132
IPR016166	FAD-bd_PCMH	ProSiteProfiles	72	248
IPR016169	FAD-bd_PCMH_sub2	Gene3D	141	525
IPR036318	FAD-bd_PCMH-like_sf	SUPERFAMILY	29	249
IPR006094	Oxid_FAD_bind_N	Pfam	76	214

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
AA7	458	529	2.7e-78	70	523

External Links

No external refs found!