Sobic.005G126800.1

Description : long chain base2

Gene families : OG_01_0001135 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001135_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G126800.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G126800.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_158
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_143

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	ISM	GOs from InterProScan
MF	GO:0016740	transferase activity	ISM	GOs from InterProScan
MF	GO:0019842	vitamin binding	None	Extended
MF	GO:0030170	pyridoxal phosphate binding	ISM	GOs from InterProScan
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0070279	vitamin B6 binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001917	Aminotrans_II_pyridoxalP_BS	ProSitePatterns	308	317
IPR004839	Aminotransferase_I/II	Pfam	101	460
IPR015421	PyrdxlP-dep_Trfase_major	Gene3D	117	367
IPR015424	PyrdxlP-dep_Trfase	SUPERFAMILY	91	465
IPR015422	PyrdxlP-dep_Trfase_small	Gene3D	97	460

No CAZYmes available for this sequence

External Links

No external refs found!