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Description : pumilio 12
Gene families : OG_01_0018576 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0018576_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G164800.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G164800.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_105 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_99 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR016024 | ARM-type_fold | SUPERFAMILY | 406 | 721 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 413 | 446 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 671 | 696 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 600 | 629 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 526 | 554 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 448 | 482 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 492 | 518 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 632 | 665 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 561 | 594 |
| IPR011989 | ARM-like | Gene3D | 391 | 728 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 663 | 700 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 592 | 627 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 480 | 519 |
| IPR033712 | Pumilio_RNA-bd | CDD | 407 | 721 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 408 | 443 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 592 | 627 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 665 | 700 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 444 | 479 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 556 | 591 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 520 | 555 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 628 | 662 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 483 | 519 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 444 | 479 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 555 | 591 |
| IPR033133 | PUM-HD | ProSiteProfiles | 386 | 726 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 408 | 443 |
No CAZYmes available for this sequence
| No external refs found! |