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  5. Sobic.005G197000.1

Sobic.005G197000.1


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0067591 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0067591_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G197000.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G197000.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_50
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_49


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 87 189
IPR000504 RRM_dom SMART 7 78
IPR000504 RRM_dom SMART 107 179
IPR000504 RRM_dom ProSiteProfiles 106 183
IPR035979 RBD_domain_sf SUPERFAMILY 104 193
IPR035979 RBD_domain_sf SUPERFAMILY 4 98
IPR000504 RRM_dom Pfam 108 170
IPR000504 RRM_dom Pfam 8 65
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 4 86
IPR000504 RRM_dom ProSiteProfiles 6 82

No CAZYmes available for this sequence

No external refs found!