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  5. Sobic.005G210700.1

Sobic.005G210700.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0010778 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010778_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G210700.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G210700.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_158
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_388


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 407 432
IPR002885 Pentatricopeptide_rpt Pfam 232 261
IPR002885 Pentatricopeptide_rpt Pfam 307 326
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 333 367
IPR002885 Pentatricopeptide_rpt Pfam 333 379
IPR002885 Pentatricopeptide_rpt Pfam 193 224
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 230 264
IPR011990 TPR-like_helical_dom_sf Gene3D 103 300
IPR011990 TPR-like_helical_dom_sf Gene3D 304 522
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 194 228
IPR002885 Pentatricopeptide_rpt TIGRFAM 196 224
IPR002885 Pentatricopeptide_rpt TIGRFAM 232 266
IPR002885 Pentatricopeptide_rpt TIGRFAM 335 369
IPR002885 Pentatricopeptide_rpt TIGRFAM 307 326
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 368 403

No CAZYmes available for this sequence

No external refs found!