Sobic.005G215300.1

Description : laccase 7

Gene families : OG_01_0007444 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007444_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G215300.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G215300.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_225
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_24

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009698	phenylpropanoid metabolic process	None	Extended
BP	GO:0009808	lignin metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016491	oxidoreductase activity	ISM	GOs from InterProScan
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	None	Extended
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0019748	secondary metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0046271	phenylpropanoid catabolic process	None	Extended
BP	GO:0046274	lignin catabolic process	ISM	GOs from InterProScan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
CC	GO:0048046	apoplast	ISM	GOs from InterProScan
MF	GO:0052716	hydroquinone:oxygen oxidoreductase activity	ISM	GOs from InterProScan
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR034285	CuRO_2_LCC	CDD	167	316
IPR001117	Cu-oxidase_2nd	Pfam	166	299
IPR017761	Laccase	TIGRFAM	31	593
IPR011707	Cu-oxidase-like_N	Pfam	39	152
IPR034288	CuRO_1_LCC	CDD	34	150
IPR008972	Cupredoxin	SUPERFAMILY	27	177
IPR008972	Cupredoxin	Gene3D	164	357
IPR008972	Cupredoxin	SUPERFAMILY	160	355
IPR002355	Cu_oxidase_Cu_BS	ProSitePatterns	561	572
IPR008972	Cupredoxin	Gene3D	10	150
IPR011706	Cu-oxidase_C	Pfam	465	580
IPR033138	Cu_oxidase_CS	ProSitePatterns	556	576
IPR008972	Cupredoxin	SUPERFAMILY	395	594
IPR034289	CuRO_3_LCC	CDD	441	581
IPR045087	Cu-oxidase_fam	PANTHER	3	596
IPR008972	Cupredoxin	Gene3D	389	599

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
AA1	358	601	2.6e-117	49	573

External Links

No external refs found!

Sobic.005G215300.1

Expression Profile

Co-expression Networks

Functional Annotation