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  5. Sobic.005G216300.1

Sobic.005G216300.1


Description : U2 snRNP auxilliary factor, large subunit, splicing factor


Gene families : OG_01_0000156 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000156_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.005G216300.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G216300.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_106
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_108


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
BP GO:0006397 mRNA processing ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 206 307
IPR035979 RBD_domain_sf SUPERFAMILY 332 533
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 440 544
IPR003954 RRM_dom_euk SMART 445 531
IPR003954 RRM_dom_euk SMART 212 290
IPR006529 U2AF_lg TIGRFAM 39 543
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 320 430
IPR035979 RBD_domain_sf SUPERFAMILY 192 296
IPR000504 RRM_dom SMART 212 290
IPR000504 RRM_dom SMART 332 405
IPR000504 RRM_dom SMART 451 531
IPR000504 RRM_dom ProSiteProfiles 331 409
IPR000504 RRM_dom ProSiteProfiles 211 294
IPR000504 RRM_dom Pfam 333 402

No CAZYmes available for this sequence

No external refs found!