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Description : pumilio 1
Gene families : OG_01_0021544 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0021544_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.005G226800.2 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_131 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011989 | ARM-like | Gene3D | 1 | 330 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 110 | 145 |
| IPR016024 | ARM-type_fold | SUPERFAMILY | 3 | 321 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 120 | 144 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 153 | 185 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 78 | 111 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 191 | 218 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 223 | 257 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 267 | 298 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 13 | 40 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 44 | 74 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 263 | 298 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 219 | 254 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 183 | 218 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 38 | 73 |
| IPR033133 | PUM-HD | ProSiteProfiles | 1 | 324 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 146 | 182 |
| IPR033712 | Pumilio_RNA-bd | CDD | 3 | 320 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 74 | 109 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 183 | 218 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 2 | 37 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 146 | 182 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 263 | 298 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 38 | 73 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 219 | 254 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 110 | 145 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 74 | 109 |
No CAZYmes available for this sequence
| No external refs found! |