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  5. Sobic.006G012500.1

Sobic.006G012500.1


Description : Sec23/Sec24 protein transport family protein


Gene families : OG_01_0002279 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002279_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G012500.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G012500.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_252
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_69


Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport ISM GOs from InterProScan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
CC GO:0030127 COPII vesicle coat ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR041742 Sec24-like_trunk_dom CDD 420 661
IPR036175 Sec23/24_helical_dom_sf SUPERFAMILY 757 864
IPR006896 Sec23/24_trunk_dom Pfam 420 656
IPR006895 Znf_Sec23_Sec24 Pfam 346 383
IPR036174 Znf_Sec23_Sec24_sf SUPERFAMILY 333 419
IPR029006 ADF-H/Gelsolin-like_dom_sf Gene3D 865 992
IPR036180 Gelsolin-like_dom_sf SUPERFAMILY 880 1012
IPR012990 Sec23_24_beta_S Pfam 662 745
IPR036465 vWFA_dom_sf SUPERFAMILY 420 655
IPR036465 vWFA_dom_sf Gene3D 422 659
IPR006900 Sec23/24_helical_dom Pfam 757 860

No CAZYmes available for this sequence

No external refs found!