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  5. Sobic.006G014400.1

Sobic.006G014400.1


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0005765 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005765_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G014400.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G014400.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_160
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_85


Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012334 Pectin_lyas_fold Gene3D 135 477
IPR018082 AmbAllergen PRINTS 182 207
IPR018082 AmbAllergen PRINTS 218 234
IPR018082 AmbAllergen PRINTS 362 381
IPR018082 AmbAllergen PRINTS 384 403
IPR018082 AmbAllergen PRINTS 455 478
IPR018082 AmbAllergen PRINTS 282 303
IPR018082 AmbAllergen PRINTS 426 450
IPR018082 AmbAllergen PRINTS 158 175
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 112 478
IPR002022 Pec_lyase SMART 210 407
IPR002022 Pec_lyase Pfam 218 399
IPR045032 PEL PANTHER 85 481

No CAZYmes available for this sequence

No external refs found!