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  5. Sobic.006G023400.1

Sobic.006G023400.1


Description : senescence-associated gene 12


Gene families : OG_01_0004346 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004346_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G023400.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G023400.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_41
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_148


Type GO Term Name Evidence Source
BP GO:0006508 proteolysis ISM GOs from InterProScan
MF GO:0008234 cysteine-type peptidase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR038765 Papain-like_cys_pep_sf SUPERFAMILY 29 337
IPR000668 Peptidase_C1A_C Pfam 122 336
IPR000668 Peptidase_C1A_C PRINTS 297 303
IPR000668 Peptidase_C1A_C PRINTS 140 155
IPR000668 Peptidase_C1A_C PRINTS 281 291
IPR000668 Peptidase_C1A_C SMART 122 337
IPR025660 Pept_his_AS ProSitePatterns 279 289
IPR013201 Prot_inhib_I29 Pfam 36 93
IPR013201 Prot_inhib_I29 SMART 36 93
IPR025661 Pept_asp_AS ProSitePatterns 297 316
IPR039417 Peptidase_C1A_papain-like CDD 123 336
IPR000169 Pept_cys_AS ProSitePatterns 140 151

No CAZYmes available for this sequence

No external refs found!