Sobic.006G031900.1

Description : expansin 11

Gene families : OG_01_0000144 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000144_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G031900.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G031900.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_177
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_36

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009664	plant-type cell wall organization	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002963	Expansin	PANTHER	10	262
IPR009009	RlpA-like_DPBB	Pfam	71	159
IPR007112	Expansin/allergen_DPBB_dom	ProSiteProfiles	54	169
IPR036908	RlpA-like_sf	Gene3D	24	164
IPR036749	Expansin_CBD_sf	Gene3D	169	263
IPR007118	Expan_Lol_pI	PRINTS	152	168
IPR007118	Expan_Lol_pI	PRINTS	206	220
IPR007118	Expan_Lol_pI	PRINTS	244	258
IPR007118	Expan_Lol_pI	PRINTS	35	50
IPR007118	Expan_Lol_pI	PRINTS	53	71
IPR007118	Expan_Lol_pI	PRINTS	75	93
IPR036908	RlpA-like_sf	SUPERFAMILY	28	187
IPR007112	Expansin/allergen_DPBB_dom	SMART	71	159
IPR007117	Expansin_CBD	Pfam	170	247
IPR007117	Expansin_CBD	ProSiteProfiles	179	258
IPR036749	Expansin_CBD_sf	SUPERFAMILY	166	257
IPR002963	Expansin	PRINTS	144	157
IPR002963	Expansin	PRINTS	108	118
IPR002963	Expansin	PRINTS	127	144
IPR002963	Expansin	PRINTS	168	180
IPR002963	Expansin	PRINTS	215	236
IPR002963	Expansin	PRINTS	180	201
IPR002963	Expansin	PRINTS	244	260
IPR002963	Expansin	PRINTS	66	80
IPR002963	Expansin	PRINTS	95	106

No CAZYmes available for this sequence

External Links

No external refs found!