Sobic.006G044200.1

Description : Glycosyl hydrolase family protein with chitinase insertion domain

Gene families : OG_01_0010748 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010748_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G044200.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G044200.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_15
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_209

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0005975	carbohydrate metabolic process	ISM	GOs from InterProScan
MF	GO:0008061	chitin binding	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR029070	Chitinase_insertion_sf	Gene3D	280	356
IPR017853	Glycoside_hydrolase_SF	SUPERFAMILY	54	390
IPR029070	Chitinase_insertion_sf	SUPERFAMILY	281	356
IPR011583	Chitinase_II	SMART	41	385
IPR001223	Glyco_hydro18_cat	Pfam	56	385
IPR001223	Glyco_hydro18_cat	ProSiteProfiles	40	402

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
GH18	296	468	1.8e-46	59	389

External Links

No external refs found!