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  5. Sobic.006G046700.1

Sobic.006G046700.1


Description : vacuolar protein sorting 11


Gene families : OG_01_0001871 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001871_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G046700.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G046700.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_102
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_205


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006886 intracellular protein transport ISM GOs from InterProScan
BP GO:0016192 vesicle-mediated transport ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR024763 VPS11_C Pfam 911 953
IPR016528 VPS11 PANTHER 3 954
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 42 340
IPR016528 VPS11 PIRSF 1 580
IPR016528 VPS11 PIRSF 568 960
IPR011990 TPR-like_helical_dom_sf Gene3D 357 641
IPR001841 Znf_RING ProSiteProfiles 871 906
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 574 785
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 413 529
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 405 556

No CAZYmes available for this sequence

No external refs found!